IQ-TREE version 1.1.0

Oct 23, 2014

We are pleased to release the major update 1.1 with the following new enhancements:

Under-the-hood code optimization for the default likelihood kernel, which gives a speedup up to 5X for DNA and 10X for protein alignments.
Support for Windows platforms and support GCC, Clang, MS Visual C++ and Intel C++ compilers.
Automatical handling of identical sequences in the alignment (no warnings about identical sequences anymore).
Bootstrap and tree search stopping rule combined for more accurate results.
Several bugs fixed.