Documentation

Web Server Tutorial

A quick starting guide for the IQ-TREE Web Server.

→ Read All Web Server Tutorial Here

Assessing Phylogenetic Assumptions

This guide is about evaluating the suitability of the data for phylogenetic analysis.

→ Read All Assessing Phylogenetic Assumptions Here

Developer Guide

This guide gives developers an overview of IQ-TREE software design, data structures and discusses possibility to incorporate new models into IQ-TREE.

→ Read All Developer Guide Here

Analyzing Big Data

Hints and strategies to analyze big alignments with >= 1000 sequences or >= 10,000 sites.

→ Read All Analyzing Big Data Here